About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05301PROTHROMBIN
HS05302FOUR-JOINTED BOX PROTEIN 1
HS05303B-BOX DOMAIN CONTAINING
HS05304LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
HS05305BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS05306INTERFERON REGULATORY FACTOR
HS05307PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1
HS05308RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS05309UNCHARACTERIZED
HS05310RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS05311TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED
HS05312L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
HS05313L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
HS05314MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS05315REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05316ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING
HS05317CHONDROITIN SYNTHASE
HS05318GH04784P
HS05319YEAST SPT2-RELATED
HS05320L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
HS05321RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS05322CARNITINE O-ACYLTRANSFERASE
HS05323GLYCOSIDASE FAMILY 31
HS05324RIBOSOMAL PROTEIN L23-RELATED
HS05325INSULIN-LIKE GROWTH FACTOR II
HS05326AROMATIC AMINO ACID HYDROXYLASE
HS05327TESTIS-SPECIFIC Y-ENCODED PROTEIN
HS05328PLECKSTRIN HOMOLOGY-LIKE DOMAIN, PQ-RICH PROTEIN
HS05329OXYSTEROL-BINDING PROTEIN-RELATED
HS05330CYTOKINE RECEPTOR
HS05331PROTEIN-TYROSINE-PHOSPHATASE
HS05332DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS05333MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
HS05334INWARD RECTIFIER POTASSIUM CHANNEL
HS05335ATP-BINDING CASSETTE SUB-FAMILY C
HS05336PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
HS05337UNCHARACTERIZED
HS05338CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
HS05339DRAB11-RELATED
HS05340NY-REN-41 ANTIGEN L15 -RELATED
HS05341OLIGOPEPTIDE TRANSPORTER-RELATED
HS05342B-BOX DOMAIN CONTAINING
HS05343GEO07735P1-RELATED-RELATED
HS05344CYTOSOLIC CARBOXYPEPTIDASE
HS05345FORMIN-BINDING PROTEIN 4
HS05346BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN
HS05347-
HS05348CCR4 NOT-RELATED
HS05349WASH COMPLEX SUBUNIT 4
HS05350DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41
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