About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05151TETRATRICOPEPTIDE REPEAT PROTEIN 23
HS05152SYNEMIN
HS05153TYROSINE-PROTEIN KINASE RECEPTOR
HS05154HIGH-AFFINITY CHOLINE TRANSPORTER 1
HS05155CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161
HS05156ANOCTAMIN
HS05157SI:CH211-196P9.1-RELATED
HS05158EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS05159TETRASPANIN
HS05160BARDET-BIEDL SYNDROME 10 PROTEIN
HS05161SYNAPTOTAGMIN
HS05162EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS05163CYTOKINE RECEPTOR
HS05164GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS05165CXYORF1
HS05166DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
HS05167PEPTIDYLPROLYL ISOMERASE
HS05168CHONDROITIN SYNTHASE
HS05169TROPONIN I
HS05170C2 DOMAIN-CONTAINING PROTEIN 5
HS05171
HS05172LIPASE MATURATION FACTOR
HS05173MYOINOSITOL OXYGENASE
HS05174ADRENOMEDULLIN, ADM
HS05175MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
HS05176
HS05177SIT4 YEAST -ASSOCIATING PROTEIN-RELATED
HS05178DNAJ-LIKE-2, ISOFORM A-RELATED
HS05179CROSSVEINLESS 2
HS05180CADHERIN-23
HS05181RETICULOCALBIN
HS05182TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED
HS05183ZINC FINGER HOMEOBOX PROTEIN
HS05184CRYPTOCHROME
HS05185GLYCINE CLEAVAGE SYSTEM H PROTEIN
HS05186DOWN REGULATED IN RENAL CARCINOMA 1/TU3A
HS05187PROTEIN CBG13728
HS05188METABOTROPIC GLUTAMATE RECEPTOR
HS05189SEMAPHORIN
HS05190SEMAPHORIN
HS05191SEMAPHORIN
HS05192PICCOLO/BASSOON
HS05193VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS05194PLASMINOGEN-RELATED
HS05195ANTIGEN BSP, PUTATIVE-RELATED
HS05196RNA-BINDING MOTIF PROTEIN 14B
HS05197LD15586P
HS05198PROLINE-RICH TRANSMEMBRANE PROTEIN 3
HS05199INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED
HS05200SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
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