About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05051SKI ONCOGENE-RELATED
HS05052SIMILAR TO ENSANGP00000021391
HS05053IQ DOMAIN-CONTAINING PROTEIN H
HS05054ALPHA- AND GAMMA-ADAPTIN-BINDING PROTEIN P34
HS05055SMAD
HS05056SMAD
HS05057SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 5
HS05058GLYCOSYL HYDROLASE
HS05059PROTEIN ZWILCH HOMOLOG
HS0506060S RIBOSOMAL PROTEIN L4
HS05061DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN
HS05062DELTA-RELATED
HS05063SCAVENGER RECEPTOR CLASS F
HS05064SODIUM/POTASSIUM/CALCIUM EXCHANGER
HS05065UNCHARACTERIZED
HS05066VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
HS05067HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY
HS05068SIMILAR TO HUMAN CHROMOSOME 15 OPEN READING FRAME 39
HS05069SIMILAR TO HUMAN CHROMOSOME 15 OPEN READING FRAME 39
HS05070RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS05071BETA-HEXOSAMINIDASE
HS05072NUCLEAR HORMONE RECEPTOR
HS05073BAND 7 PROTEIN-RELATED
HS05074-
HS05075SPERIOLIN-BINDING FACTOR
HS05076COILED-COIL DOMAIN-CONTAINING PROTEIN 180
HS05077SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS05078SEMAPHORIN
HS05079COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
HS05080FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE
HS05081ALPHA-MANNOSIDASE 2C1
HS05082CARBONIC ANHYDRASE
HS05083KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
HS05084UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS05085
HS05086UNCHARACTERIZED
HS05087CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR
HS05088SERINE/THREONINE-PROTEIN KINASE 17
HS05089T CELL-SPECIFIC ADAPTER PROTEIN TSAD
HS05090RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS05091CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
HS05092LEUCINE RICH REPEAT PROTEIN
HS05093DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
HS05094DNAJ-LIKE-2, ISOFORM A-RELATED
HS0509540S RIBOSOMAL PROTEIN S27
HS05096LD44762P
HS05097TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS05098KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05099UBIQUITIN THIOESTERASE
HS05100UNCHARACTERIZED
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