About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04751
HS04752LD11652P
HS04753RESISTANCE TO INHIBITORS OF CHOLINESTERASE PROTEIN 3 RIC3
HS04754PROTEASOME SUBUNIT ALPHA/BETA
HS04755CALCITONIN-RELATED
HS04756INSCUTEABLE
HS04757CHOLINE/ETHANOALAMINE KINASE
HS04758FI18025P1
HS04759SMALL ACIDIC PROTEIN-RELATED
HS04760PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN
HS04761GH11727P
HS04762RIBOSOMAL PROTEIN S15P/S13E
HS04763PHOSPHATIDYLINOSITOL KINASE
HS04764
HS04765NUCLEOBINDIN
HS047662-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
HS04767CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
HS04768OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN
HS04769G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE
HS04770G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE
HS04771HYPOTHETICAL PROTEIN LOC691921
HS04772EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10
HS04773SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
HS04774RH59310P
HS04775ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 3
HS04776CHROMOSOME 11 OPEN READING FRAME 96
HS04777UNCHARACTERIZED
HS04778ARGININE OR CREATINE KINASE
HS04779PROTEIN DISULFIDE ISOMERASE
HS04780RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
HS04781ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
HS04782ABHYDROLASE DOMAIN-CONTAINING PROTEIN
HS04783F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
HS04784AGGRECAN/VERSICAN PROTEOGLYCAN
HS04785DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
HS04786MICROTUBULE-ASSOCIATED PROTEIN
HS04787SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
HS04788PROTEIN CBG26694
HS04789MANNOSE-6-PHOSPHATE ISOMERASE
HS04790THREE PRIME REPAIR EXONUCLEASE 1, 2
HS04791THREE PRIME REPAIR EXONUCLEASE 1, 2
HS04792UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
HS04793PROTEASOME SUBUNIT ALPHA/BETA
HS04794ORNITHINE DECARBOXYLASE ANTIZYME
HS04795PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS04796ADP-DEPENDENT GLUCOKINASE
HS04797SORTING NEXIN-22 AND 24
HS04798DYNEIN INTERMEDIATE CHAIN
HS04799ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
HS04800SYNAPTIC VESICLE GLYCOPROTEIN 2
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