About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04601DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN
HS04602E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS04603
HS04604SI:CH211-196P9.1-RELATED
HS04605CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER
HS04606GRAM DOMAIN-CONTAINING PROTEIN 4
HS04607CADHERIN-87A
HS04608REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04609SPHINGOSINE KINASE
HS04610E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS04611ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS04612CHEMOKINE-LIKE PROTEIN TAFA-5-RELATED
HS04613PHD FINGER PROTEINS
HS04614RIBOSOMAL RNA METHYLTRANSFERASE
HS04615SERINE/THREONINE-PROTEIN KINASE PIM
HS04616KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
HS04617ACYL-COENZYME A THIOESTERASE-RELATED
HS04618METABOTROPIC GLUTAMATE RECEPTOR
HS04619PROTECTION OF TELOMERES 1
HS04620ENZYMATIC POLYPROTEIN-RELATED
HS04621TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS04622CALCIUM-DEPENDENT SECRETION ACTIVATOR
HS04623ZINC FINGER AND BTB DOMAIN-CONTAINING
HS04624SACCHAROPINE DEHYDROGENASE
HS04625RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS04626ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS04627TROPOMODULIN
HS04628SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
HS04629HYALURONIDASE
HS04630
HS04631HYALURONIDASE
HS04632HYALURONIDASE
HS04633HYALURONIDASE
HS04634PROSAPOSIN RECEPTOR GPR37 FAMILY MEMBER
HS04635E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS04636FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24
HS04637UNCHARACTERIZED
HS04638ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
HS04639
HS04640ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS04641ZINC FINGER PROTEIN
HS04642
HS04643TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS04644SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
HS04645RFWD3 PROTEIN
HS04646SELECTIN LIGAND RELATED
HS04647
HS04648URICASE AND TRANSTHYRETIN-RELATED
HS04649ATP-DEPENDENT PROTEASE
HS04650VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
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