About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04401BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2
HS04402UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS04403
HS04404
HS0440524-DEHYDROCHOLESTEROL REDUCTASE
HS04406TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04407TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04408
HS04409TRANSMEMBRANE PROTEIN 205
HS04410SOLUTE CARRIER FAMILY 35
HS04411AQUAPORIN
HS04412RIBONUCLEASE P SUBUNIT P21
HS04413SERINE/THREONINE-PROTEIN KINASE TAO
HS04414PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS X PROTEIN
HS04415CENTROSOMAL PROTEIN OF 19K CEP19
HS04416INHIBITOR OF GROWTH PROTEIN
HS04417EXPRESSED PROTEIN
HS04418AAA DOMAIN-CONTAINING
HS04419ANKYRIN REPEAT FAMILY PROTEIN
HS04420
HS04421
HS04422OXYSTEROL-BINDING PROTEIN-RELATED
HS04423IMPACT-RELATED
HS044245-HYDROXYTRYPTAMINE RECEPTOR
HS04425PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS04426GTPASE, IMAP FAMILY MEMBER-RELATED
HS04427LEUCINE-RICH REPEAT, ISOFORM F-RELATED
HS04428TRANSCRIPTION FACTOR MAF
HS04429RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
HS04430MULTIFUNCTIONAL PROTEIN ADE2
HS04431AMIDOPHOSPHORIBOSYLTRANSFERASE
HS04432
HS04433BETA-ALANINE-ACTIVATING ENZYME
HS04434CANCER-RELATED REGULATOR OF ACTIN DYNAMICS
HS04435CARBOHYDRATE SULFOTRANSFERASE
HS04436CENTROSOMAL PROTEIN CEP135
HS04437SEC3/SYNTAXIN-RELATED
HS04438NEUROMEDIN-U
HS04439TRANSMEMBRANE PROTEIN HTP-1 RELATED
HS04440DFG10 PROTEIN
HS04441TYROSINE-PROTEIN KINASE RECEPTOR
HS04442PROTEIN CBG11839-RELATED
HS04443TYROSINE-PROTEIN KINASE RECEPTOR
HS04444TYROSINE-PROTEIN KINASE RECEPTOR
HS04445
HS04446GS HOMEOBOX 2
HS04447VESICLE PROTEIN SORTING-ASSOCIATED
HS04448RAS-LIKE FAMILY MEMBER 11
HS04449RAS-LIKE FAMILY MEMBER 11
HS04450UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
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