About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04201HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
HS04202SMALL INDUCIBLE CYTOKINE A
HS04203SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS04204DISCS LARGE
HS04205T CELL-SPECIFIC ADAPTER PROTEIN TSAD
HS04206LD44762P
HS0420740S RIBOSOMAL PROTEIN S27
HS04208TROPOMYOSIN
HS04209ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
HS04210LIPASE
HS04211COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
HS04212COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
HS04213COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
HS04214LIM/HOMEOBOX PROTEIN LHX
HS04215NUCLEAR HORMONE RECEPTOR
HS04216ATF6, ISOFORM C
HS04217OLFACTOMEDIN-RELATED
HS04218TORSIN-1A-INTERACTING PROTEIN
HS04219TORSIN-1A-INTERACTING PROTEIN
HS04220CELL ADHESION MOLECULE
HS04221FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
HS04222PDF RECEPTOR-LIKE PROTEIN-RELATED
HS04223EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS04224CYTOCHROME P450 508A4-RELATED
HS04225UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN
HS04226FATTY ACID AMIDE HYDROLASE
HS04227DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
HS04228
HS04229SERINE/THREONINE-PROTEIN KINASE
HS04230FATTY ACID ACYL TRANSFERASE-RELATED
HS04231ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
HS04232TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER
HS04233G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS04234-
HS04235CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
HS04236LIM/HOMEOBOX PROTEIN LHX
HS04237UNCHARACTERIZED
HS04238SERINE-THREONINE PROTEIN KINASE
HS04239FUCOSE-1-PHOSPHATE GUANYLYLTRANSFERASE
HS04240ACYL COENZYME A THIOESTER HYDROLASE
HS04241SINGLE STRANDED DNA BINDING PROTEIN
HS04242IODOTHYRONINE DEIODINASE
HS04243TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
HS04244FATTY ACID ACYL TRANSFERASE-RELATED
HS04245FATTY ACID ACYL TRANSFERASE-RELATED
HS04246ADENINE DNA GLYCOSYLASE
HS04247ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1
HS04248SRCR DOMAIN-CONTAINING PROTEIN
HS04249HL07962P-RELATED
HS04250EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
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