About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04251SH3 DOMAIN-CONTAINING
HS04252
HS04253NUCLEAR HORMONE RECEPTOR HR3-RELATED
HS04254
HS04255SEMAPHORIN
HS04256PERILIPIN
HS04257ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
HS04258GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS04259PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS04260SIMILAR TO RIKEN CDNA 1700025G04 GENE
HS04261
HS04262ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
HS04263DIHYDRODIPICOLINATE SYNTHASE
HS04264VESICLE-TRAFFICKING PROTEIN SEC22B
HS04265CRUMBS FAMILY MEMBER
HS04266NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
HS04267PROTEIN FAM78A
HS04268REQUIRED FOR EXCISION 1-B DOMAIN-CONTAINING PROTEIN
HS04269CYTOKINE RECEPTOR
HS04270TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN
HS04271SINGLE STRANDED DNA BINDING PROTEIN
HS04272PEPTIDYLPROLYL ISOMERASE
HS04273OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS04274
HS04275HISTONE H3 METHYLTRANSFERASE
HS04276MUELLERIAN-INHIBITING FACTOR
HS04277
HS04278
HS04279C2 DOMAIN-CONTAINING PROTEIN
HS04280
HS04281SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS04282NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN
HS04283PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS04284TRANSCRIPTION FACTOR ONECUT
HS04285FORKHEAD BOX PROTEIN
HS04286ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
HS04287DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN
HS04288AGAP004733-PA
HS04289AGAP004733-PA
HS04290
HS04291BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
HS04292UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 6.4 KD PROTEIN
HS04293METHYL-CPG BINDING PROTEIN, MBD
HS04294DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
HS04295PROTEIN UNC-13 HOMOLOG
HS04296TRANSLATION ELONGATION FACTOR-RELATED
HS04297CELL ADHESION MOLECULE
HS04298AGAP001464-PB
HS04299RNA BINDING PROTEIN
HS04300RGM DOMAIN FAMILY MEMBER DRAG-1
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