About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04101RECEPTOR TRANSPORTING PROTEIN
HS04102NEUROTRANSMITTER GATED ION CHANNEL
HS04103NEUROTRANSMITTER GATED ION CHANNEL
HS04104PHOX (PX) DOMAIN-CONTAINING PROTEIN
HS04105TSC22 DOMAIN FAMILY PROTEIN 2
HS04106PROFILIN
HS04107REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04108REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04109RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED
HS04110PROTEIN PHOSPHATASE INHIBITOR
HS04111
HS04112CENTAURIN/ARF
HS04113
HS0411426S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
HS041155-HYDROXYTRYPTAMINE RECEPTOR
HS04116HYPOTHETICAL PROTEIN LOC100362216
HS04117REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04118BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS04119DYNAMIN
HS04120CATION-TRANSPORTING ATPASE-RELATED
HS04121SEVEN TRANSMEMBRANE PROTEIN 1-RELATED
HS04122LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
HS04123PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS04124XYLOSIDE XYLOSYLTRANSFERASE 1
HS04125SERINE/ARGININE-RICH SPLICING FACTOR
HS04126
HS04127ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
HS04128TRANS-SULFURATION ENZYME FAMILY MEMBER
HS04129
HS04130G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS04131ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED
HS04132REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04133IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED
HS04134VITELLOGENIN-RELATED
HS04135ADHESION G-PROTEIN COUPLED RECEPTOR
HS04136ADHESION G-PROTEIN COUPLED RECEPTOR
HS04137TUBULIN POLYGLUTAMYLASE
HS04138CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS04139POLYCOMB GROUP PROTEIN
HS04140URICASE
HS04141
HS04142DEOXYRIBONUCLEASE II
HS04143DEOXYRIBONUCLEASE II
HS04144U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
HS04145TRANSPOSABLE ELEMENT-RELATED
HS04146CYTOCHROME P450 508A4-RELATED
HS04147SPERMATOGENESIS-ASSOCIATED PROTEIN 1
HS04148DI-N-ACETYLCHITOBIASE
HS04149VITELLOGENIN-RELATED
HS04150AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN
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