About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03951FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN
HS03952UNCHARACTERIZED
HS03953SOX TRANSCRIPTION FACTOR
HS03954PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS03955
HS03956CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
HS03957LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
HS03958FETUIN
HS03959PHOSPHATIDYLINOSITOL KINASE
HS03960ZINC FINGER MATRIN-TYPE PROTEIN 3
HS03961RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS03962ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1
HS03963ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1
HS03964TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
HS03965ALLANTOINASE
HS03966AMINOTRANSFERASE CLASS V
HS03967THYMIDYLATE KINASE
HS03968CYSTEINE PROTEASE ATG4
HS03969BCL-2 RELATED
HS03970
HS03971FERM DOMAIN CONTAINING PROTEIN
HS03972SCP160
HS03973STAR-RELATED LIPID TRANSFER PROTEIN 9
HS03974CYSTEINE DESULFURYLASE FAMILY MEMBER
HS03975ESPIN
HS03976ESPIN
HS03977KELCH PROTEIN
HS03978CENTROSOMAL PROTEIN 2
HS03979NOTCH LIGAND FAMILY MEMBER
HS03980TYROSINE-PROTEIN KINASE RECEPTOR
HS03981ORGANIC ANION TRANSPORTER
HS03982RAS-RELATED PROTEIN RAB
HS03983
HS03984UNCHARACTERIZED
HS03985HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130
HS03986ANGIOMOTIN
HS03987MYOSIN VII, XV
HS03988G-PROTEIN COUPLED RECEPTOR
HS03989SH2 DOMAIN-CONTAINING PROTEIN
HS03990SNRNP CORE PROTEIN FAMILY MEMBER
HS03991ZINC FINGER PROTEIN
HS03992ZYX102 PROTEIN
HS03993CHROMOSOME 1 OPEN READING FRAME 112
HS03994TUMOR PROTEIN P63-REGULATED GENE 1-LIKE PROTEIN
HS03995RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS03996B-BOX DOMAIN CONTAINING
HS03997ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY
HS03998UPF0449 PROTEIN C19ORF25
HS03999HVA22-LIKE PROTEINS
HS04000TETRASPANIN
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