About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03701PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS03702KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
HS03703FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS03704
HS03705
HS03706
HS03707PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
HS03708RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
HS03709GUANIDINOACETATE N-METHYLTRANSFERASE
HS03710NADH DEHYDROGENASE
HS03711TRANSMEMBRANE PROTEIN 79
HS03712SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS03713DULLARD PROTEIN PHOSPHATASE
HS03714AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT
HS03715R3H DOMAIN-CONTAINING PROTEIN 4
HS03716CYTOKINE RECEPTOR
HS03717-
HS03718TETRATRICOPEPTIDE REPEAT PROTEIN 22
HS03719DUF614 FAMILY PROTEIN-RELATED
HS03720DUF614 FAMILY PROTEIN-RELATED
HS03721TETRATRICOPEPTIDE REPEAT PROTEIN 4
HS03722MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
HS03723ILGF DOMAIN-CONTAINING PROTEIN
HS03724PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS03725CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS03726
HS03727SENTRIN/SUMO-SPECIFIC PROTEASE
HS03728AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
HS03729NUCLEOTIDE KINASE
HS03730TYROSINE-PROTEIN KINASE HOPSCOTCH
HS03731OS02G0815200 PROTEIN
HS03732VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS03733TYROSINE-PROTEIN KINASE RECEPTOR
HS03734PHOSPHOHEXOMUTASE FAMILY MEMBER
HS03735EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7
HS03736DOLICHYL GLYCOSYLTRANSFERASE
HS03737FORKHEAD BOX PROTEIN
HS03738
HS03739CYSTEINE PROTEASE ATG4
HS03740DEDICATOR OF CYTOKINESIS DOCK
HS03741FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS03742UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS03743KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
HS03744ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS03745LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
HS03746DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
HS03747PROTEIN FAM183B
HS03748RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED
HS03749TRANSMEMBRANE PROTEIN 125
HS03750AP COMPLEX SUBUNIT MU
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