About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03451
HS03452FIN BUD INITIATION FACTOR FIBIN
HS03453GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
HS03454MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS
HS03455
HS03456NUCLEAR HORMONE RECEPTOR
HS03457ARL14 EFFECTOR PROTEIN
HS03458GLYCOPROTEIN HORMONE BETA CHAIN
HS03459VOLTAGE-GATED POTASSIUM CHANNEL
HS03460TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS03461TETRASPANIN
HS03462UNCHARACTERIZED
HS03463CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70
HS03464DNA REPAIR/RNA PROCESSING CPSF FAMILY
HS03465TETRASPANIN
HS03466TRANSALDOLASE
HS03467
HS03468ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS03469SIN3B-RELATED
HS03470SOLUTE CARRIER FAMILY 25 MEMBER 44
HS03471PROTEASOME SUBUNIT ALPHA/BETA
HS03472U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
HS03473CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB
HS03474TETRASPANIN
HS03475CYCLINS
HS03476SUPPRESSOR OF VARIEGATION 4-20-RELATED
HS03477DNA POLYMERASE EPSILON SUBUNIT 3
HS0347860S RIBOSOMAL PROTEIN L12
HS03479VOLTAGE-GATED POTASSIUM CHANNEL
HS03480MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
HS03481NAD P H OXIDOREDUCTASE-RELATED
HS03482
HS03483BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS03484-
HS03485CASEIN KINASE II SUBUNIT ALPHA
HS03486ZINC FINGER PROTEIN
HS03487
HS03488GH28348P
HS0348926S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13
HS03490NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
HS03491ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS03492CADHERIN-23
HS03493BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED
HS03494ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS03495ZINC FINGER PROTEIN 200
HS03496AGGRECAN/VERSICAN PROTEOGLYCAN
HS03497DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
HS03498MICROTUBULE-ASSOCIATED PROTEIN
HS03499TUMOR SUPPRESSOR P53-BINDING PROTEIN 1
HS03500NF-KAPPA-B-REPRESSING FACTOR-RELATED
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