About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03401UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
HS03402SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
HS03403-
HS03404PROTEIN SIDEKICK
HS0340540S RIBOSOMAL PROTEIN S17
HS03406SORTING NEXIN
HS03407CASEIN KINASE-RELATED
HS03408SODIUM/POTASSIUM/CALCIUM EXCHANGER
HS03409VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
HS03410SOLUTE CARRIER FAMILY 22 MEMBER 18
HS03411
HS03412NUCLEAR HORMONE RECEPTOR
HS03413COILED-COIL DOMAIN-CONTAINING PROTEIN 180
HS03414KELCH PROTEIN
HS03415HISTONE H4
HS03416HISTONE H2B
HS03417HISTONE H1
HS03418SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS03419METALLOPHOSPHOESTERASE
HS03420ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
HS03421RHO-GTPASE-ACTIVATING PROTEIN LRG1
HS03422TRANSCRIPTION FACTOR E2F
HS03423STEERIN
HS03424OXIDOREDUCTASE HTATIP2
HS03425ENDONUCLEASE-RELATED
HS03426UNCHARACTERIZED
HS03427PROTEIN ARGININE N-METHYLTRANSFERASE
HS03428SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS03429NEL HOMOLOG
HS03430LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS03431GLYCOSYLTRANSFERASE-RELATED
HS03432JNK-INTERACTING PROTEIN 1-LIKE PROTEIN
HS03433ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS03434CALCIUM BINDING PROTEINS
HS03435CARBOHYDRATE SULFOTRANSFERASE
HS03436SOLUTE CARRIER FAMILY 35
HS03437PROTHROMBIN
HS03438SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS03439
HS03440METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
HS03441ANTIGEN BSP, PUTATIVE-RELATED
HS03442RH59310P
HS03443TTC17 PROTEIN
HS03444TNF RECEPTOR ASSOCIATED FACTOR
HS03445TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS03446CYCLIN-DEPENDENT KINASE INHIBITOR 1
HS03447POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
HS03448SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS03449UNCHARACTERIZED
HS03450
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