About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03251SCD6 PROTEIN-RELATED
HS03252TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4
HS03253POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
HS03254CARBOHYDRATE SULFOTRANSFERASE
HS03255LDOC1 RELATED
HS03256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03257ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03258PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
HS03259LUPUS LA PROTEIN-RELATED
HS03260BETA-AMYLOID BINDING PROTEIN-RELATED
HS03261THREONINE-TRNA LIGASE
HS03262SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
HS03263GROWTH ARREST-SPECIFIC PROTEIN 1
HS03264ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN
HS03265PH DOMAIN-CONTAINING PROTEIN
HS03266DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS03267UNCHARACTERIZED
HS03268MITOCHONDRIAL CARRIER HOMOLOG
HS03269DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS03270DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS03271DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS03272DED DOMAIN-CONTAINING PROTEIN
HS03273ANOCTAMIN
HS03274BCL-2 RELATED
HS03275PLAKOPHILLIN-RELATED
HS03276TETRASPANIN
HS03277AROMATIC AMINO ACID HYDROXYLASE
HS03278ADAPTIN, ALPHA/GAMMA/EPSILON
HS03279NAZO FAMILY MEMBER
HS03280DIABETES AND OBESITY REGULATED, ISOFORM G
HS03281ZGC:162297
HS03282CYCLINS
HS03283ZINC FINGER PROTEIN
HS03284TEASHIRT-RELATED
HS03285INSULIN-LIKE GROWTH FACTOR II
HS03286ZINC FINGER PROTEIN
HS03287DPY-19-LIKE 1, LIKE (H. SAPIENS)
HS03288CADHERIN-23
HS03289UNCHARACTERIZED
HS03290TRANSPOSABLE ELEMENT-RELATED
HS03291
HS03292ACTIN BUNDLING/MISSING IN METASTASIS-RELATED
HS03293DELTA(14)-STEROL REDUCTASE
HS03294ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS03295MATRIX METALLOPROTEINASE
HS03296ADHESION G-PROTEIN COUPLED RECEPTOR
HS03297ADHESION G-PROTEIN COUPLED RECEPTOR
HS03298RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED
HS03299AMINO ACID TRANSPORTER
HS03300ADHESION G-PROTEIN COUPLED RECEPTOR
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