About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03301SYNAPSE-ASSOCIATED PROTEIN
HS03302PHOSPHATASE, ORPHAN 1, 2
HS03303CADHERIN-23
HS03304
HS03305REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03306ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03307MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS03308DISCONNECTED-RELATED
HS03309SH3 DOMAIN-CONTAINING
HS03310CONNEXIN
HS03311EG:114D9.1 PROTEIN-RELATED
HS03312REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03313LAMIN DM0-RELATED
HS03314REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03315CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
HS03316TOLL-INTERACTING PROTEIN
HS03317RNA BINDING PROTEIN
HS03318ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS03319MESODERM DEVELOPMENT CANDIDATE 2
HS03320TALIN ROD DOMAIN-CONTAINING PROTEIN 1
HS03321REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03322UNCHARACTERIZED
HS03323CYCLINS
HS03324GEO13458P1
HS03325FIBROBLAST GROWTH FACTOR
HS03326FIBROBLAST GROWTH FACTOR
HS03327FIBROBLAST GROWTH FACTOR
HS03328VACUOLAR SORTING PROTEIN 35
HS03329UPF0547 PROTEIN C16ORF87
HS03330ALANINE AMINOTRANSFERASE
HS03331METHIONYL-TRNA FORMYLTRANSFERASE
HS03332ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03333LONGEVITY ASSURANCE FACTOR 1 LAG1
HS03334TRANSLATION ELONGATION FACTOR-RELATED
HS03335RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1
HS03336REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03337TRANSMEMBRANE CHANNEL-RELATED
HS03338PRO-INTERLEUKIN-16
HS03339TRANSMEMBRANE PROTEIN 2-RELATED
HS03340ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
HS03341
HS03342
HS03343CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
HS03344ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS03345FUMARYLACETOACETASE
HS03346ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
HS03347WINS1, 2 PROTEIN
HS03348ALDEHYDE DEHYDROGENASE-RELATED
HS03349LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1
HS03350CHONDROITIN SYNTHASE
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