About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03351U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A
HS03352SELENOPROTEIN S
HS03353
HS03354EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS03355EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS03356EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS03357EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS03358ANOCTAMIN
HS0335952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
HS03360TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4
HS03361
HS03362
HS03363HEAT SHOCK PROTEIN 70KDA
HS03364SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED
HS03365ACID CLUSTER PROTEIN 33
HS03366PROGRAMMED CELL DEATH PROTEIN 7
HS03367
HS03368TRANSPOSABLE ELEMENT-RELATED
HS03369LD44032P
HS03370KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
HS03371RAS-LIKE FAMILY MEMBER 11
HS03372ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA-RELATED
HS03373CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL
HS03374
HS03375V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS03376SMAD
HS03377SMAD
HS03378REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03379DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
HS03380SKI ONCOGENE-RELATED
HS03381ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
HS03382CELL ADHESION MOLECULE
HS03383MORTALITY FACTOR 4-LIKE PROTEIN
HS03384ANKYCORBIN
HS03385TRANSDUCIN-LIKE ENHANCER PROTEIN
HS03386
HS03387KINESIN-RELATED
HS03388ADIPOR/PROGESTIN RECEPTOR-RELATED
HS03389D-GLUCURONYL C5-EPIMERASE
HS03390ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32
HS03391CORONIN
HS03392INTEGRIN ALPHA
HS03393CELL ADHESION MOLECULE
HS03394ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03395CEROID-LIPOFUSCINOSIS NEURONAL PROTEIN 6
HS03396NEUROTRANSMITTER GATED ION CHANNEL
HS03397BRAKELESS PROTEIN
HS03398
HS03399GRAM DOMAIN-CONTAINING PROTEIN 2A
HS03400SENTRIN-SPECIFIC PROTEASE 8
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