About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03501GAMMA TUBULIN COMPLEX PROTEIN
HS03502
HS03503COCAINE AND AMPHETAMINE REGULATED TRANSCRIPT PROTEIN
HS03504COCAINE AND AMPHETAMINE REGULATED TRANSCRIPT PROTEIN
HS03505RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
HS03506CREB-REGULATED TRANSCRIPTION COACTIVATOR
HS03507ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03508SERINE INCORPORATOR
HS03509HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER
HS03510MICROFIBRIL-ASSOCIATED PROTEIN
HS03511GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1
HS03512VESICLE PROTEIN SORTING-ASSOCIATED
HS03513PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
HS03514PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1
HS03515NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3
HS03516CEREBELLIN-RELATED
HS03517DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS03518NACHT, LRR AND CARD DOMAINS-CONTAINING
HS03519VACUOLAR ATP SYNTHASE SUBUNIT AC39
HS03520FORKHEAD BOX PROTEIN R1
HS03521C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS03522CALDESMON
HS03523PROLINE-RICH PROTEIN 33
HS03524TROPONIN T
HS03525MYOGENIC FACTOR
HS03526EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS03527GAMMA-SECRETASE SUBUNIT APH-1
HS03528TROPONIN I
HS03529SELECTIN LIGAND RELATED
HS03530PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS03531ERO1-RELATED
HS03532STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED
HS03533
HS03534GTP CYCLOHYDROLASE I
HS03535WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
HS03536ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS03537PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS03538ZINC FINGER PROTEIN
HS03539
HS03540BTK-BINDING PROTEIN-RELATED
HS03541CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR
HS03542DENN DOMAIN-CONTAINING PROTEIN 4
HS03543ZINC FINGER AND BTB DOMAIN-CONTAINING
HS03544ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS03545TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
HS03546SERINE/THREONINE-PROTEIN KINASE 17
HS03547DRAB11-RELATED
HS03548SCAVENGER RECEPTOR CLASS F
HS03549RIBONUCLEASE
HS03550RIBONUCLEASE
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