About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03551TIMELESS INTERACTING-RELATED
HS03552BETA/GAMMA CRYSTALLIN
HS03553CYSTEINYL-TRNA SYNTHETASE
HS03554REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03555UNCHARACTERIZED
HS03556ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED
HS03557ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS03558LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS03559CORTACTIN AND DREBRIN
HS03560SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
HS03561SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
HS03562RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS03563
HS03564
HS03565ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS03566SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
HS03567CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
HS03568PROTEIN CBG11839-RELATED
HS03569DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
HS03570RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
HS03571ZINC FINGER PROTEIN
HS03572REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03573
HS03574XPA-BINDING PROTEIN 1-RELATED
HS03575RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
HS03576STATHMIN
HS03577
HS03578
HS03579CEREBELLIN-RELATED
HS03580FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
HS03581CCAAT/ENHANCER BINDING PROTEIN
HS03582CCAAT/ENHANCER BINDING PROTEIN
HS03583CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8
HS03584RNA-BINDING PROTEIN NOB1
HS03585GATOR COMPLEX PROTEIN WDR59
HS03586G PATCH DOMAIN-CONTAINING PROTEIN 1
HS03587KINESIN-LIKE PROTEIN KLP-3
HS03588CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS03589ANNEXIN
HS03590ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS03591
HS03592NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT
HS03593RED PROTEIN IK FACTOR CYTOKINE IK
HS03594ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS03595G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS03596RGS-GAIP INTERACTING PROTEIN GIPC
HS03597GRAM DOMAIN-CONTAINING PROTEIN 2B-RELATED
HS03598
HS03599
HS03600CYTOKINE RECEPTOR
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