About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03101THIOREDOXIN-LIKE PROTEN 4A, 4B
HS03102LIM DOMAIN-CONTAINING PROTEIN
HS03103NTPASE, KAP FAMILY P-LOOP DOMAIN-CONTAINING 1
HS03104TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS03105REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03106CADHERIN-87A
HS03107EPM2A-INTERACTING PROTEIN 1
HS03108PROTEIN DIAPHANOUS
HS03109TRANSPOSABLE ELEMENT-RELATED
HS03110SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
HS03111CADHERIN-87A
HS03112REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
HS03113TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS03114REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03115
HS03116CADHERIN-87A
HS03117REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
HS03118TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS03119PROTEIN CBG26694
HS03120POU DOMAIN
HS03121RING FINGER PROTEIN 219
HS03122
HS03123RNA RECOGNITION RRM/RNP DOMAIN
HS03124-
HS03125RAD25/XP-B DNA REPAIR HELICASE
HS03126GPALPP MOTIFS-CONTAINING PROTEIN 1
HS03127GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2
HS03128ROLLING PEBBLES, ISOFORM B
HS03129WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1
HS03130TRANSCRIPTION INTERMEDIARY FACTOR
HS03131MARCH7/10 E3 UBIQUITIN PROTEIN LIGASE FAMILY MEMBER
HS03132MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS03133MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS03134RNA BINDING PROTEIN
HS03135EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
HS03136TENASCIN
HS03137BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH
HS03138MOTOR NEURON AND PANCREAS HOMEOBOX PROTEIN
HS03139SERINE/THREONINE-PROTEIN KINASE 16
HS03140PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN
HS03141INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS03142INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS03143INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS03144COILED-COIL DOMAIN-CONTAINING PROTEIN 81
HS03145SERINE PROTEASE
HS03146UNCHARACTERIZED
HS03147TRANSMEMBRANE AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN
HS03148TRANSMEMBRANE AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN
HS03149CELL SURFACE A33 ANTIGEN
HS03150LEUCOKININ RECEPTOR-RELATED
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