About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03001FI18025P1
HS03002PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN
HS03003NUCLEOBINDIN
HS03004GPI-ANCHORED PROTEIN P137
HS03005HOMEOBOX PROTEIN ARISTALESS
HS03006ACETYLGLUCOSAMINYLTRANSFERASE
HS03007DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
HS03008
HS03009DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER
HS03010CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
HS03011PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL
HS03012SYNAPTOTAGMIN
HS03013
HS03014SYNTENIN RELATED
HS03015SORBITOL DEHYDROGENASE
HS03016TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2
HS03017TIGHT JUNCTION PROTEIN
HS03018PROTEIN FAM189A
HS03019GOLGI PHOSPHOPROTEIN 2/GP73-RELATED
HS03020DULLARD PROTEIN PHOSPHATASE
HS03021STEREOCILIN RELATED
HS03022STEREOCILIN RELATED
HS03023EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J
HS03024CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
HS03025PROTEIN SIDEKICK
HS03026ANOCTAMIN
HS03027SOLUTE CARRIER FAMILY 17
HS03028TRANSGELIN
HS03029TRANSMEMBRANE PROTEIN 178B-RELATED
HS03030ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4
HS03031ETS
HS03032TITIN
HS03033GLYCOPROTEIN HORMONE RECEPTOR
HS03034REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS03035S-ADENOSYL-METHYLTRANSFERASE MRAW
HS03036CENTROMERE PROTEIN E
HS03037U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10
HS03038
HS0303960S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER
HS03040FERRITIN
HS03041METHYLMALONYL-COA EPIMERASE
HS03042IST1 FAMILY MEMBER
HS03043POLYCYSTIN FAMILY MEMBER
HS03044DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
HS030455-HYDROXYTRYPTAMINE RECEPTOR
HS03046TRYPSIN-RELATED
HS03047SULFOTRANSFERASE SULT
HS03048MICROSOMAL DIPEPTIDASE
HS03049SOLUTE CARRIER FAMILY 22 MEMBER
HS03050
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