About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02701OXIDOREDUCTASES
HS02702I[[H]] CHANNEL, ISOFORM E
HS02703RETROTRANSPOSON
HS02704BASIGIN RELATED
HS02705EG:EG0003.4 PROTEIN-RELATED
HS02706EG:EG0003.4 PROTEIN-RELATED
HS02707NEUROTRANSMITTER GATED ION CHANNEL
HS02708EG:EG0003.4 PROTEIN-RELATED
HS02709NEUROTRANSMITTER GATED ION CHANNEL
HS02710NEUROTRANSMITTER GATED ION CHANNEL
HS02711UBIQUITIN-CONJUGATING ENZYME E2
HS02712
HS02713HEAVYWEIGHT, ISOFORM A
HS02714UBIQUILIN
HS02715BUTYROPHILIN
HS02716
HS02717-
HS02718LYSYL OXIDASE-LIKE-RELATED
HS02719SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
HS02720PROTEIN SIDEKICK
HS02721PROTEIN UNC-13 HOMOLOG
HS02722HISTONE H2A
HS02723TRANSCRIPTION FACTOR ONECUT
HS02724GH03947P
HS02725ENDOSULFINE
HS02726MYOSIN
HS02727DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
HS02728GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
HS02729BCL-2 RELATED
HS02730TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS02731SIGNAL PEPTIDE PEPTIDASE
HS02732NADH-UBIQUINONE OXIDOREDUCTASE
HS02733OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS02734SEMAPHORIN
HS02735PR DOMAIN ZINC FINGER PROTEIN
HS02736TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS02737PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS02738GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS02739UNCHARACTERIZED
HS02740
HS02741
HS02742ALPHA-PROTEIN KINASE 2-RELATED
HS02743SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
HS02744GASTRIN-RELEASING PEPTIDE
HS02745TETRASPANIN
HS02746PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS02747INSULIN GENE ENHANCER PROTEIN
HS02748TRANSMEMBRANE PROTEIN 266
HS02749F-BOX ONLY PROTEIN 22
HS02750TROPOMYOSIN
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