About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02551E3 UBIQUITIN-PROTEIN LIGASE TRIM37
HS02552POU DOMAIN
HS02553PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
HS02554
HS02555L1 TRANSPOSABLE ELEMENT-RELATED
HS02556ENDONUCLEASE-RELATED
HS02557PDZ AND LIM DOMAIN PROTEIN ZASP
HS02558AMPLIFIED IN BREAST CANCER 2-RELATED
HS02559INWARD RECTIFIER POTASSIUM CHANNEL
HS02560VACUOLAR PROTEIN SORTING 26 RELATED
HS02561AQUAPORIN
HS02562REMODELING AND SPACING FACTOR 1
HS02563FCH AND DOUBLE SH3 DOMAINS PROTEIN
HS02564SARCOSINE DEHYDROGENASE-RELATED
HS02565INWARD RECTIFIER POTASSIUM CHANNEL
HS02566SOLUTE CARRIER FAMILY 22 MEMBER
HS02567SOLUTE CARRIER FAMILY 22 MEMBER
HS02568STROMAL INTERACTION MOLECULE HOMOLOG
HS02569
HS02570DOLICHYL GLYCOSYLTRANSFERASE
HS02571UNCHARACTERIZED
HS02572PRE-MRNA CLEAVAGE COMPLEX II
HS02573NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3
HS02574RAP GTPASE-ACTIVATING PROTEIN
HS02575HISTONE H3
HS02576SI:CH211-196P9.1-RELATED
HS02577HISTONE H2A
HS02578MICROTUBULE-ASSOCIATED PROTEIN 11
HS02579NUCLEOPORIN
HS02580
HS02581
HS02582CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED
HS02583
HS02584
HS02585SCHWANNOMIN INTERACTING PROTEIN 1
HS02586G-PROTEIN COUPLED RECEPTOR
HS02587SERINE PROTEASE INHIBITOR, SERPIN
HS02588SERINE PROTEASE INHIBITOR, SERPIN
HS02589ORGANIC ANION TRANSPORTER
HS02590
HS02591G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS02592G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS02593NEUROTRANSMITTER GATED ION CHANNEL
HS02594E3 UBIQUITIN-PROTEIN LIGASE SIAH2
HS02595
HS02596RNA-BINDING MOTIF PROTEIN, X-LINKED 2
HS02597AP COMPLEX SUBUNIT MU
HS02598ARRESTIN
HS02599FORKHEAD BOX PROTEIN
HS02600SOLUTE CARRIER FAMILY 22 MEMBER
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