About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02401REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02402BASIGIN RELATED
HS02403IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED
HS02404REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02405UNCHARACTERIZED
HS02406PANNEXIN
HS02407HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS02408TRANSMEMBRANE PROTEIN 218
HS02409PROTEIN SIDEKICK
HS02410PROTEIN SIDEKICK
HS02411MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 2
HS02412ENDOTHELIAL CELL-SELECTIVE ADHESION MOLECULE
HS02413ZYGIN
HS02414CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
HS02415HEPACAM FAMILY MEMBER 2-RELATED
HS02416SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1
HS02417TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
HS02418IG-LIKE DOMAIN-CONTAINING PROTEIN
HS02419CBL
HS02420OXYGENASE-RELATED
HS02421OPTICIN
HS02422PYRUVATE DEHYDROGENASE KINASE
HS02423CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
HS02424UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS02425NEUROTRANSMITTER GATED ION CHANNEL
HS02426NEUROTRANSMITTER GATED ION CHANNEL
HS02427ZINC FINGER PROTEIN
HS02428CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
HS02429IG-LIKE DOMAIN-CONTAINING PROTEIN
HS02430STEROL DESATURASE
HS02431EXPRESSED PROTEIN
HS02432LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
HS02433UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS02434ALPHA-TECTORIN-RELATED
HS02435CT120 PROTEIN
HS02436CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS02437SH2-SH3 ADAPTOR PROTEIN-RELATED
HS0243814-3-3 PROTEIN
HS02439IONOTROPIC GLUTAMATE RECEPTOR
HS02440REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02441ENGULFMENT AND CELL MOTILITY
HS02442DUF914-RELATED
HS02443RAB GDP/GTP EXCHANGE FACTOR
HS02444INWARD RECTIFIER POTASSIUM CHANNEL
HS02445POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
HS02446PHOSPHOGLYCERATE KINASE
HS02447CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL
HS02448MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
HS02449-
HS02450SET DOMAIN PROTEINS
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