About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02451
HS02452TYROSINE-PROTEIN KINASE RECEPTOR
HS02453ZINC FINGER PROTEIN 385B-LIKE
HS02454UBIQUITIN INTERACTION MOTIF-CONTAINING PROTEIN 1
HS02455
HS02456HEXOKINASE
HS02457RBP-RELATED
HS02458CORTACTIN AND DREBRIN
HS02459VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1
HS02460G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
HS02461HSPC111 PROTEIN-RELATED
HS02462
HS02463ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 9-RELATED
HS02464BOMB/KIRA PROTEINS
HS02465ARGINYL-TRNA SYNTHETASE
HS02466RHO-TYPE GTPASE ACTIVATING PROTEIN
HS02467
HS02468SARCOGLYCAN
HS02469B-BOX DOMAIN CONTAINING
HS02470CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED
HS02471GEM-ASSOCIATED PROTEIN 5
HS0247215-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
HS0247315-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
HS02474LUPUS LA PROTEIN-RELATED
HS02475T-CELL IMMUNOGLOBULIN AND MUCIN DOMAIN-CONTAINING PROTEIN 4
HS02476FGF RECEPTOR ACTIVATING PROTEIN 1
HS02477RHO FAMILY GTPASE
HS02478REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02479SH3 MULTIPLE DOMAIN
HS02480BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE
HS02481RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
HS02482B-CELL TRANSLOCATION GENE
HS02483SI:CH211-196P9.1-RELATED
HS02484MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
HS02485G-PROTEIN COUPLED RECEPTOR
HS02486SERINE/THREONINE-PROTEIN KINASE DOA-RELATED
HS02487REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02488SPERMATHECAL PHYSIOLOGY VARIANT
HS02489MONOOXYGENASE P33MONOX-RELATED
HS02490PREMATURE OVARIAN FAILURE, 1B
HS02491
HS02492SPROUTY
HS02493POU DOMAIN
HS02494LDOC1 RELATED
HS02495KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS02496KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS02497UNCHARACTERIZED
HS02498RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN
HS02499CLAUDIN
HS02500CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE
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