About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02151CHARGED MULTIVESICULAR BODY PROTEIN
HS02152PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
HS02153PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
HS02154WD REPEAT DOMAIN 9
HS02155CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT
HS02156RPA-RELATED PROTEIN RADX
HS02157GRB2-ASSOCIATED-BINDING PROTEIN
HS02158UNCHARACTERIZED
HS02159N4BP1-RELATED
HS02160MERLIN/MOESIN/EZRIN/RADIXIN
HS02161
HS02162KNIRPS-RELATED PROTEIN-RELATED
HS02163OLIGOPHRENIN 1
HS02164CONNEXIN
HS02165NEUROTRANSMITTER GATED ION CHANNEL
HS02166CONNEXIN
HS02167PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC
HS02168APOPTOSIS-INDUCING FACTOR 1
HS02169LYSINE-SPECIFIC DEMETHYLASE
HS02170
HS02171ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS02172NEUROLIGIN
HS02173FIBROBLAST GROWTH FACTOR
HS02174CLAUDIN
HS02175NUCLEOPLASMIN
HS02176ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS02177
HS02178INHIBITORY SYNAPTIC FACTOR 2A-RELATED
HS02179CADHERIN-87A
HS02180CADHERIN-87A
HS02181CADHERIN-87A
HS02182DESMOGLEIN FAMILY MEMBER
HS02183
HS02184PROTEIN SIDEKICK
HS02185KELCH PROTEIN
HS02186PROTEIN PHOSPHATASE
HS02187T-BOX PROTEIN-RELATED
HS02188ACETYL-COA CARBOXYLASE, ISOFORM A
HS02189LIM/HOMEOBOX PROTEIN LHX
HS02190PROTEIN CBR-CLEC-78
HS02191MYOSIN HEAVY CHAIN, NON-MUSCLE
HS02192CONNEXIN
HS02193KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS02194SERINE-THREONINE PROTEIN KINASE
HS02195
HS02196
HS02197-
HS02198RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
HS02199NUCLEAR FRAGILE X MENTAL RETARDATION-INTERACTING PROTEIN 2
HS02200TRANSMEMBRANE PROTEIN 88-RELATED
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