About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01901MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS01902NEUROGENIC PROTEIN MASTERMIND
HS01903HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1
HS01904PROTEIN EVA-1
HS01905PROTEIN C21ORF59
HS01906INOSITOL 5-PHOSPHATASE
HS01907
HS01908PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
HS01909ZGC:174356
HS01910TRANSPOSABLE ELEMENT-RELATED
HS01911CADHERIN-87A
HS01912CADHERIN-23
HS01913ARFAPTIN-RELATED
HS01914INVERTED FORMIN-2
HS01915E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
HS01916E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS01917MATRIX PROTEIN, PUTATIVE-RELATED
HS01918MATRIX PROTEIN, PUTATIVE-RELATED
HS01919UBIQUITIN-FOLD MODIFIER 1
HS01920TRANSIENT RECEPTOR POTENTIAL CHANNEL
HS01921PERIOSTIN-RELATED
HS01922EG:EG0003.4 PROTEIN-RELATED
HS01923TRANSCRIPTION FACTOR SPT20 HOMOLOG
HS01924EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
HS01925GLYCOSYL TRANSFERASE
HS01926SMAD
HS01927REGULATORY FACTOR X-ASSOCIATED PROTEIN
HS01928DOUBLECORTIN DOMAIN CONTAINING 2
HS01929COILED-COIL DOMAIN-CONTAINING PROTEIN 169
HS01930SPARTIN
HS01931
HS01932SERINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 1
HS01933BEIGE/BEACH-RELATED
HS01934BEIGE/BEACH-RELATED
HS01935RHO-TYPE GTPASE ACTIVATING PROTEIN
HS01936REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
HS01937GLYCOSYL HYDROLASE
HS01938ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED
HS01939ZYGOTE ARREST PROTEIN 1-LIKE ISOFORM X1
HS01940FURRY-RELATED
HS01941GLYCOPROTEIN HORMONE RECEPTOR
HS01942
HS01943FRINGE-RELATED
HS01944
HS01945MICROSOMAL GLUTATHIONE S-TRANSFERASE
HS01946RETINOVIN-RELATED
HS01947HIGH MOBILITY GROUP PROTEIN DSP1
HS01948UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN
HS01949G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01950G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
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