About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02351
HS02352ARGININE OR CREATINE KINASE
HS02353F-BOX ONLY PROTEIN 6-LIKE PROTEIN
HS02354SODIUM/CALCIUM EXCHANGER
HS02355MATRIN 3/NUCLEAR PROTEIN 220-RELATED
HS02356MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS02357EF HAND DOMAIN FAMILY A1,A2-RELATED
HS02358EPM2A-INTERACTING PROTEIN 1
HS02359SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS02360GAF/PUTATIVE CYTOSKELETAL PROTEIN
HS02361SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2
HS02362TESTIS EXPRESSED GENE 14
HS02363BIOTIN PROTEIN LIGASE
HS02364HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
HS02365MINA53 MYC INDUCED NUCLEAR ANTIGEN
HS02366BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS02367UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS02368
HS02369NUCLEAR FACTOR RIP140
HS02370SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED
HS02371GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
HS02372SERINE PROTEASE INHIBITOR, SERPIN
HS02373ALKALINE CERAMIDASE 3
HS02374MATRIX METALLOPROTEINASE
HS02375ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
HS02376RIBOSOMAL PROTEIN S6 KINASE
HS02377
HS02378
HS02379
HS02380
HS02381
HS02382ANGIOMOTIN
HS02383ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS02384OLIGORIBONUCLEASE, MITOCHONDRIAL
HS02385REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02386NEPHRIN
HS02387REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02388ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS02389CLATHRIN ASSEMBLY PROTEIN
HS02390BITESIZE, ISOFORM I
HS02391DISCS LARGE
HS02392REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02393HMG-BOX TRANSCRIPTION FACTOR BBX
HS02394VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
HS02395HSC70CB, ISOFORM G-RELATED
HS02396CYTOTOXIC AND REGULATORY T-CELL MOLECULE
HS02397HEAT SHOCK PROTEIN 70KDA
HS02398UNCHARACTERIZED
HS02399HOMEO BOX HB9 LIKE A-RELATED
HS02400EPITHELIAL MEMBRANE PROTEIN-RELATED
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