About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02651
HS0265226S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
HS02653GH01354P
HS02654REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02655DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
HS02656-
HS02657SEMAPHORIN
HS02658RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING
HS02659SODIUM/POTASSIUM/CALCIUM EXCHANGER
HS02660RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
HS02661RABCONNECTIN-RELATED
HS02662RETROTRANSPOSON
HS02663
HS02664OLFACTOMEDIN-RELATED
HS02665UNCHARACTERIZED
HS02666UNCHARACTERIZED
HS02667POLY(A) RNA POLYMERASE
HS02668ADENYLATE CYCLASE TYPE 1
HS02669
HS02670BROMODOMAIN CONTAINING PROTEIN
HS02671
HS02672PROTEIN NAKED CUTICLE
HS02673NACHT, LRR AND CARD DOMAINS-CONTAINING
HS02674NACHT, LRR AND CARD DOMAINS-CONTAINING
HS0267540S RIBOSOMAL PROTEIN S3A
HS02676SAL-LIKE PROTEIN
HS02677
HS02678AGAP000281-PA
HS02679RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
HS02680POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
HS02681PROTEIN CBG26694
HS02682RNA BINDING PROTEIN
HS02683
HS02684RIBONUCLEASE P SUBUNIT P25
HS02685MICROSOMAL DIPEPTIDASE
HS02686PROTEIN CBG26694
HS02687SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS02688SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS02689PHOSPHOLIPID ACYLTRANSFERASE
HS02690MATRIX METALLOPROTEINASE
HS02691
HS02692SI:CH211-196P9.1-RELATED
HS02693IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS02694IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS02695ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
HS02696UBIQUITIN-CONJUGATING ENZYME E2
HS02697CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
HS02698ZONA PELLUCIDA SPERM-BINDING PROTEIN
HS02699
HS02700PYRUVATE KINASE
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