About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02951UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS02952LCCL DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G08630)
HS02953ZINC FINGER HOMEOBOX PROTEIN
HS02954REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS02955ATP-DEPENDENT RNA HELICASE
HS02956CYTOCHROME B5
HS02957HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS02958COPINE
HS0295960S RIBOSOMAL PROTEIN L13
HS02960GLYCINE CLEAVAGE SYSTEM H PROTEIN
HS02961LYSYL-TRNA SYNTHETASE
HS02962NFAT
HS02963POLYCYSTIN FAMILY MEMBER
HS02964BOLA-LIKE PROTEIN 3
HS02965SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE
HS02966MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS02967UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS02968DICKKOPF3-LIKE 3
HS02969CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS02970TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
HS02971RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS02972BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED
HS02973N-ACETYLGALACTOSAMINYLTRANSFERASE
HS02974TRANSPOSABLE ELEMENT-RELATED
HS02975EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
HS02976RNA POLYMERASE-ASSOCIATED PROTEIN CTR9
HS02977LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1
HS02978HYALURONAN RECEPTOR
HS02979AMP DEAMINASE
HS02980ADRENOMEDULLIN, ADM
HS02981MYOTUBULARIN-RELATED
HS02982SWAP-70 RECOMBINASE
HS02983IMPORTIN-7, 8, 11
HS02984-
HS02985PINSTRIPE, ISOFORM A
HS02986UNCHARACTERIZED
HS02987SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
HS02988TRANSMEMBRANE PROTEIN 9 FAMILY MEMBER
HS02989DENN DOMAIN-CONTAINING PROTEIN 2
HS02990TRANSCRIPTION INTERMEDIARY FACTOR
HS02991SERINE/THREONINE-PROTEIN KINASE
HS02992LD11652P
HS02993RESISTANCE TO INHIBITORS OF CHOLINESTERASE PROTEIN 3 RIC3
HS02994TUBBY-RELATED
HS02995SI:CH211-196P9.1-RELATED
HS02996RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS02997COATOMER SUBUNIT BETA
HS02998CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS02999CYTOCHROME P450 508A4-RELATED
HS03000CALCITONIN-RELATED
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