About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS02901AMMONIUM TRANSPORTER
HS02902TYROSINE-PROTEIN KINASE
HS02903PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS02904STEREOCILIN RELATED
HS02905DYNEIN REGULATORY COMPLEX SUBUNIT 4
HS02906TRANSCRIPTION FACTOR E2F
HS02907SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE
HS02908AMINO ACID TRANSPORTER
HS02909ASPARTATE AMINOTRANSFERASE
HS02910CALBINDIN
HS02911UNCHARACTERIZED
HS02912AMINO ACID TRANSPORTER
HS02913NEURITIN-RELATED
HS02914THAP DOMAIN PROTEIN 11
HS02915BCDNA.GH03377
HS02916DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS02917CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4
HS02918GTP-BINDING PROTEIN ALPHA SUBUNIT
HS02919TUMOR NECROSIS FACTOR RECEPTOR TYPE 1-ASSOCIATED DEATH DOMAIN PROTEIN
HS02920HISTONE ACETYLTRANSFERASE COMPLEX
HS02921
HS02922ZINC FINGER PROTEIN 200
HS02923PROTEIN KINASE PKN/PRK1, EFFECTOR
HS02924CASEIN KINASE-RELATED
HS02925LD44762P
HS02926GLYCOSYLTRANSFERASE
HS02927CELL CYCLE PROGRESSION PROTEIN 1
HS02928HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS02929RFX TRANSCRIPTION FACTOR FAMILY
HS02930TSEC1-RELATED
HS02931MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1
HS02932ZINC FINGER PROTEIN
HS02933BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
HS02934CINGULIN-LIKE PROTEIN 1-RELATED
HS02935GDOWN1
HS02936GDOWN1
HS02937ALDEHYDE DEHYDROGENASE-RELATED
HS02938AQUAPORIN OR AQUAGLYCEROPORIN RELATED
HS02939LIPASE
HS02940ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
HS02941NF-E2 INDUCIBLE PROTEIN
HS02942SCAFFOLD ATTACHMENT FACTOR B-RELATED
HS02943RING ZINC FINGER
HS02944MYOSIN
HS02945MYOTUBULARIN-RELATED
HS02946ATAXIN 1
HS02947KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS02948ADAPTIN, ALPHA/GAMMA/EPSILON
HS02949-
HS02950GEO08273P1-RELATED
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