About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS03751LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 LRRC19 FAMILY MEMBER
HS03752TYROSINE-PROTEIN KINASE RECEPTOR
HS03753CYTOKINE RECEPTOR
HS03754DIMETHYLARGININE DIMETHYLAMINOHYDROLASE
HS03755CONNECTIVE TISSUE GROWTH FACTOR-RELATED
HS03756UNCHARACTERIZED
HS03757COLLAGEN ALPHA
HS03758UPF0690 PROTEIN C1ORF52
HS03759RHO GTPASE-ACTIVATING PROTEIN 100F
HS03760DYNEIN INTERMEDIATE CHAIN
HS03761SI:CH211-196P9.1-RELATED
HS03762MUCOLIPIN
HS03763LD33695P
HS03764FETUIN
HS03765EPH RECEPTOR A5
HS03766GLYPICAN
HS03767GLYPICAN
HS03768NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED
HS03769COILED-COIL DOMAIN-CONTAINING PROTEIN 17
HS03770DISCS LARGE
HS03771TRANSFERRIN
HS03772DISCS LARGE
HS03773ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS03774ODD-SKIPPED - RELATED
HS03775MUCOLIPIN
HS03776SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52
HS03777
HS03778PIKACHURIN-LIKE PROTEIN
HS03779F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
HS03780TRANSMEMBRANE 4 L6 FAMILY MEMBER 1-RELATED
HS03781GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
HS03782TRANSMEMBRANE 4 L6 FAMILY MEMBER 1-RELATED
HS03783SOLUTE CARRIER FAMILY 25
HS03784FAMILY WITH SEQUENCE SIMILARITY 102
HS03785HEN1
HS03786FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7
HS03787FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7
HS03788VESICLE PROTEIN SORTING-ASSOCIATED
HS03789SOX TRANSCRIPTION FACTOR
HS03790CLAUDIN
HS03791HEPARAN SULFATE 2-O-SULFOTRANSFERASE
HS03792LD11652P
HS03793
HS03794FI04487P
HS03795-
HS03796-
HS03797
HS03798HOMEOBOX PROTEIN BARH-LIKE
HS03799ZINC FINGER PROTEIN
HS03800ENDOGLIN/TGF-BETA RECEPTOR TYPE III
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