About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04551NETRIN/LAMININ-RELATED
HS04552NETRIN/LAMININ-RELATED
HS04553CADHERIN DOMAIN-CONTAINING PROTEIN
HS04554CADHERIN DOMAIN-CONTAINING PROTEIN
HS04555
HS04556
HS04557VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS04558NUCLEAR PORE COMPLEX PROTEIN NUP160
HS04559DOCKING PROTEIN RELATED
HS04560CYTOKINE RECEPTOR
HS04561CYTOKINE RECEPTOR
HS04562UNCHARACTERIZED
HS04563TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS04564AROMATIC AMINO ACID HYDROXYLASE
HS04565
HS04566SCD6 PROTEIN-RELATED
HS04567GLUCOSE-6-PHOSPHATE ISOMERASE
HS04568GLUCOSE-6-PHOSPHATE ISOMERASE
HS04569
HS04570M-PHASE PHOSPHOPROTEIN 6
HS04571SORTING NEXIN 20, 21
HS04572RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
HS04573EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
HS04574HYALURONAN RECEPTOR
HS04575CHROMOSOME 28 C12ORF29 HOMOLOG
HS04576CENTROSOMAL PROTEIN OF 290 KDA
HS04577-
HS04578KIT LIGAND
HS04579XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
HS04580DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS04581TRANSCRIPTION INITIATION FACTOR TFIID
HS04582CENTROSOMAL PROTEIN OF 41 KDA
HS04583PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS04584PLEXIN
HS04585
HS04586TYROSINE-PROTEIN KINASE RECEPTOR
HS04587F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
HS04588PROTEIN CBG26694
HS04589SUPPRESSION OF TUMORIGENICITY 7
HS04590WNT RELATED
HS04591ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
HS04592ATP-BINDING CASSETTE SUB-FAMILY C
HS04593
HS04594
HS04595
HS04596FILAMIN/GPBP-INTERACTING PROTEIN
HS04597
HS04598DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1
HS04599CATION TRANSPORTING ATPASE
HS04600GOLGI SNARE BET1-RELATED
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