About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04651GH08155P
HS04652
HS04653MYOGENIC FACTOR
HS04654TROPONIN T
HS04655CALDESMON
HS04656PROLINE-RICH PROTEIN 33
HS04657TROPONIN I
HS04658TROPONIN I
HS04659TROPONIN I
HS04660TROPONIN I
HS04661DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS04662SYNAPTOTAGMIN
HS04663DISULFIDE OXIDOREDUCTASE
HS04664B-BOX DOMAIN CONTAINING
HS04665B-BOX DOMAIN CONTAINING
HS04666AMINO ACID TRANSPORTER
HS04667NFAT
HS04668TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE
HS04669PROGRAMMED CELL DEATH PROTEIN 2-LIKE
HS04670MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2
HS04671SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS04672ZINC FINGER PROTEIN 277
HS04673UNCHARACTERIZED
HS04674
HS04675TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04676TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04677
HS04678
HS04679TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04680TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04681REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04682TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS04683UNCHARACTERIZED
HS04684CELL ADHESION MOLECULE
HS04685ANKYRIN REPEAT CONTAINING
HS04686INTEGRIN ALPHA
HS04687MIP11318P
HS04688GRAM DOMAIN-CONTAINING PROTEIN 2A
HS04689BRAKELESS PROTEIN
HS04690GRAM DOMAIN-CONTAINING PROTEIN 2A
HS04691TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED
HS04692UNCHARACTERIZED
HS0469340S RIBOSOMAL PROTEIN S17
HS04694
HS04695COMM DOMAIN-CONTAINING PROTEIN 9
HS04696L-FUCOSE KINASE
HS04697PCNA-ASSOCIATED FACTOR
HS04698PROTEIN NEDD1
HS04699GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED
HS04700GH10160P
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