About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04801SORTING NEXIN
HS04802HISTONE-LYSINE N-METHYLTRANSFERASE SMYD
HS04803
HS04804ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
HS04805SOLUTE CARRIER FAMILY 25 MEMBER 44
HS04806WD REPEAT-CONTAINING PROTEIN 61
HS04807FATTY ACID BINDING PROTEIN
HS04808SIN3B-RELATED
HS04809SIN3B-RELATED
HS04810RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS04811SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1
HS04812SORTING NEXIN
HS04813MATRIX PROTEIN, PUTATIVE-RELATED
HS04814SI:CH211-196P9.1-RELATED
HS04815SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS04816PROTEIN CBG11839-RELATED
HS04817HIGH MOBILITY GROUP PROTEIN 2
HS04818
HS04819SERINE/THREONINE PROTEIN KINASE
HS04820SYNAPTOTAGMIN
HS04821CATALASE
HS04822INTERFERON INDUCIBLE TRANSMEMBRANE PROTEIN
HS04823INTERFERON INDUCIBLE TRANSMEMBRANE PROTEIN
HS04824INTERFERON INDUCIBLE TRANSMEMBRANE PROTEIN
HS04825OXIDOREDUCTASE-RELATED
HS04826CYCLIN-DEPENDENT KINASE INHIBITOR 1
HS04827PHOSPHATIDYLINOSITOL SYNTHASE
HS04828TRANSMEMBRANE PROTEIN 168
HS04829UNCHARACTERIZED
HS04830HEMOGLOBIN FAMILY MEMBER
HS04831HEMOGLOBIN FAMILY MEMBER
HS04832PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
HS04833FORKHEAD BOX P, ISOFORM C
HS04834ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS04835HEMOGLOBIN FAMILY MEMBER
HS04836ANKYRIN REPEAT DOMAIN 36-RELATED
HS04837NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS04838PROTEIN PHOSPHATASE 2C
HS04839GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS04840SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS04841ALDO/KETO REDUCTASE
HS04842TRANSCRIPTION INTERMEDIARY FACTOR
HS04843EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS04844WNT RELATED
HS04845NUCLEAR HORMONE RECEPTOR
HS04846TYROSYL-TRNA SYNTHETASE
HS04847CYCLIN-DEPENDENT KINASE INHIBITOR 1
HS04848POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
HS04849REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS04850MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28
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