About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04851KUNITZ-TYPE PROTEASE INHIBITOR 1
HS04852TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
HS04853DENN DOMAIN-CONTAINING PROTEIN 2
HS04854AARF DOMAIN CONTAINING KINASE 2 (PREDICTED)
HS04855PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
HS04856PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
HS04857TRNA PSEUDOURIDINE SYNTHASE D
HS04858ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS04859CELL ADHESION MOLECULE
HS04860HISTONE DEACETYLASE HDAC1-RELATED
HS04861B-BOX DOMAIN CONTAINING
HS04862PARVIN
HS04863PARVIN
HS04864SHISA
HS04865PLEXIN
HS04866GAMMA TUBULIN COMPLEX PROTEIN
HS04867ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2
HS04868MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS04869DNA2/NAM7 HELICASE FAMILY
HS04870FRIZZLED
HS04871DBX
HS04872NEL HOMOLOG
HS04873PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS04874TRANSMEMBRANE PROTEIN 117
HS04875TWINFILIN
HS04876OS01G0750732 PROTEIN
HS04877ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS04878SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
HS04879LIM DOMAIN-CONTAINING PROTEIN
HS04880PERIPHILIN 1
HS04881RYBP AND YAF2-RELATED
HS04882IP22168P
HS04883
HS04884PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
HS04885PROTEIN SIDEKICK
HS04886PROTEIN SIDEKICK
HS04887CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA
HS04888DNAJ HOMOLOG SUBFAMILY B MEMBER 9
HS04889DYNAMIN
HS04890TROPONIN T
HS04891CALDESMON
HS04892PHOSPHOGLYCERATE MUTASE
HS04893TROPONIN I
HS04894TROPONIN I
HS04895INTERLEUKIN-17 RECEPTOR
HS04896TROPONIN I
HS04897ZGC:136858
HS04898CCR4-NOT TRANSCRIPTION COMPLEX RELATED
HS04899VOLTAGE-GATED POTASSIUM CHANNEL
HS04900VOLTAGE-GATED POTASSIUM CHANNEL
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