About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS04901NEUROPEPTIDES RECEPTOR
HS04902PARATHYROID HORMONE-RELATED
HS04903LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN
HS04904L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
HS04905CGI-141-RELATED/LIPASE CONTAINING PROTEIN
HS04906SOLUTE CARRIER FAMILY 35 MEMBER B
HS04907COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6
HS04908RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
HS04909SOWAH (DROSOPHILA) HOMOLOG
HS04910UNCHARACTERIZED
HS04911TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3
HS04912RNA BINDING PROTEIN
HS049132-OXOGLUTARATE DEHYDROGENASE
HS04914SERINE/THREONINE-PROTEIN KINASE
HS04915UNIQUE CARTILAGE MATRIX-ASSOCIATED PROTEIN
HS04916CELL DIVISION PROTEIN KINASE
HS04917ETS
HS04918HISTIDINE AMMONIA-LYASE
HS04919NETRIN/LAMININ-RELATED
HS04920METHIONINE AMINOPEPTIDASE 2
HS04921SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
HS04922FACIOGENITAL DYSPLASIA PROTEIN
HS04923NUCLEAR HORMONE RECEPTOR
HS04924CEREBRAL PROTEIN-11-RELATED
HS04925CENTROSOMAL PROTEIN OF 170 KDA
HS04926JITTERBUG, ISOFORM N
HS04927VOLTAGE-GATED POTASSIUM CHANNEL
HS04928OPSIN
HS049295'-NUCLEOTIDASE DOMAIN-CONTAINING
HS04930HEAT SHOCK PROTEIN 90 FAMILY MEMBER
HS04931CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
HS04932HMG BOX-CONTAINING PROTEIN 1
HS04933NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS04934BCR-ASSOCIATED PROTEIN, BAP
HS04935ORGANIC ANION TRANSPORTER
HS04936CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS04937ZINC FINGER PROTEIN AEBP2
HS04938PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN
HS04939PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS04940PHOSPHATIDYLINOSITOL KINASE
HS04941SIMILAR TO RIKEN CDNA 6430571L13 GENE, SIMILAR TO G20 PROTEIN
HS04942SPERM ACROSOME MEMBRANE-ASSOCIATED PROTEIN 4
HS04943REELIN
HS04944LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS04945B-BOX DOMAIN CONTAINING
HS04946TUMOR PROTEIN P53-INDUCIBLE PROTEIN 11
HS04947TETRASPANIN
HS04948TETRASPANIN
HS04949HOMEOBOX PROTEIN ARISTALESS
HS04950LD11652P
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