About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05101GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
HS05102BNIP - RELATED
HS05103FORKHEAD BOX PROTEIN
HS05104ANNEXIN
HS05105LITTLE ELONGATION COMPLEX SUBUNIT 2
HS05106NUCLEAR HORMONE RECEPTOR HR3-RELATED
HS05107C2 DOMAIN-CONTAINING PROTEIN
HS05108TALIN
HS05109TROPOMYOSIN
HS05110SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL
HS05111TRANSFORMING GROWTH FACTOR ALPHA
HS05112TRANSMEMBRANE PROTEIN 266
HS05113ELECTRON TRANSFER FLAVOPROTEIN ALPHA
HS05114INSULIN GENE ENHANCER PROTEIN
HS05115S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
HS05116GASTRIN-RELEASING PEPTIDE
HS05117RETICULOCALBIN
HS05118PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS05119TETRASPANIN
HS05120STEROL DESATURASE
HS05121UNCHARACTERIZED
HS05122ZINC FINGER PROTEIN 532-RELATED
HS05123SODIUM/NUCLEOSIDE COTRANSPORTER
HS05124ALPHA-PROTEIN KINASE 2-RELATED
HS05125MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
HS051264.1 G PROTEIN
HS05127DNA HELICASE RECQ FAMILY MEMBER
HS05128GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS05129ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS05130PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS05131NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
HS05132IP01015P-RELATED
HS05133TRANSPOSABLE ELEMENT-RELATED
HS05134SEMAPHORIN
HS05135RAS-RELATED PROTEIN RAB
HS05136PEPTIDYLPROLYL ISOMERASE
HS05137OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS05138PEROXISOMAL BIOGENESIS FACTOR 11
HS05139NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS05140RAS-LIKE FAMILY MEMBER 11
HS05141ORGANIC ANION TRANSPORTER
HS05142ALPHA-2,8-SIALYLTRANSFERASE
HS05143EXPRESSED PROTEIN
HS05144CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
HS05145
HS05146RGM DOMAIN FAMILY MEMBER DRAG-1
HS05147LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
HS05148NUCLEAR HORMONE RECEPTOR
HS05149C2 DOMAIN-CONTAINING PROTEIN
HS05150MADS BOX PROTEIN
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