About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05251GTP-BINDING PROTEIN ALPHA SUBUNIT
HS052525-HYDROXYTRYPTAMINE RECEPTOR
HS05253ADENOSYLHOMOCYSTEINASE
HS05254UBIQUITIN-CONJUGATING ENZYME E2
HS05255KELCH DOMAIN-CONTAINING PROTEIN 10
HS05256VACUOLAR CALCIUM ION TRANSPORTER
HS05257ZONA PELLUCIDA SPERM-BINDING PROTEIN
HS05258ZONA PELLUCIDA SPERM-BINDING PROTEIN
HS05259NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
HS05260SYNEMBRYN
HS05261RFX TRANSCRIPTION FACTOR FAMILY
HS05262DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
HS05263PLACENTAL PROTEIN 11-RELATED
HS05264LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS05265CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
HS05266SOLUTE CARRIER FAMILY 17
HS05267NUCLEAR HORMONE RECEPTOR
HS05268CEREBELLIN-RELATED
HS05269UBIQUITIN-CONJUGATING ENZYME E2
HS05270DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
HS05271EARLY ENDOSOME ANTIGEN 1
HS05272
HS05273PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
HS05274MIR DOMAIN-CONTAINING PROTEIN
HS05275SARCOSPAN
HS05276BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS05277RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS05278RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS05279ZINC FINGER PROTEIN 469
HS05280BTG3-ASSOCIATED NUCLEAR PROTEIN BANP
HS05281CARBOXYLESTERASE
HS05282F-BOX FAMILY PROTEIN
HS05283BC025462 PROTEIN
HS05284DNA POLYMERASE SUBUNIT GAMMA-1
HS05285UNCHARACTERIZED
HS05286CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
HS05287MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
HS05288RCC1 DOMAIN-CONTAINING PROTEIN 1
HS05289FI21225P1
HS05290ALPHA-MANNOSIDASE
HS05291PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS05292BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED
HS05293
HS05294VDJ RECOMBINATION ACTIVATING PROTEIN 1 RAG1
HS05295V D J RECOMBINATION-ACTIVATING PROTEIN 2
HS05296ANTIGEN BSP, PUTATIVE-RELATED
HS05297ETS
HS05298DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
HS05299HYALURONAN RECEPTOR
HS05300SODIUM/DICARBOXYLATE SYMPORTER-RELATED
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