About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05401MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
HS05402CAT EYE SYNDROME CRITICAL REGION PROTEIN 2
HS05403ADENOSINE DEAMINASE
HS05404RIB43A-RELATED
HS05405N-ACETYLGALACTOSAMINYLTRANSFERASE
HS05406NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
HS05407DUAL SPECIFICITY PROTEIN KINASE
HS05408WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
HS05409VOLTAGE-GATED POTASSIUM CHANNEL
HS05410
HS05411PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN
HS05412HEAT SHOCK FACTOR BINDING PROTEIN 1
HS05413DNA TOPOISOMERASE I
HS05414-
HS05415CADHERIN-23
HS05416REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05417CYCLINS
HS05418
HS05419FRUCTOSE-2,6-BISPHOSPHATASE TIGAR
HS05420
HS05421
HS05422SUGAR TRANSPORTER
HS05423UNCHARACTERIZED
HS05424TRANSCRIPTION FACTOR E2F
HS05425ENGULFMENT AND CELL MOTILITY
HS05426UNCHARACTERIZED
HS05427CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS05428MATRIX METALLOPROTEINASE
HS05429ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS05430NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
HS05431UPF0428 PROTEIN CXORF56
HS05432
HS05433
HS05434STEROL DESATURASE
HS05435ANAPHASE-PROMOTING COMPLEX SUBUNIT 13
HS05436PIERCE HOMOLOG
HS05437RING FINGER AND SRY DOMAIN-CONTAINING
HS05438ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN
HS05439MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS05440PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS05441HISTONE H2B
HS05442UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
HS05443HISTONE H4
HS05444HISTONE H2B
HS05445HISTONE H2A
HS05446HISTONE H3
HS05447
HS05448
HS05449HISTONE H2B
HS05450BARDET-BIEDL SYNDROME 2 PROTEIN
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