About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05551RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS05552RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS05553TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
HS05554PARVIN
HS05555CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS05556KELCH PROTEIN
HS05557AGAP007712-PA
HS05558PROTEIN KINASE PKN/PRK1, EFFECTOR
HS05559KRAB DOMAIN C2H2 ZINC FINGER
HS05560
HS05561SYNEMBRYN
HS05562SYNEMBRYN
HS05563SIT4 YEAST -ASSOCIATING PROTEIN-RELATED
HS05564LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
HS05565LD33804P
HS05566ADRENOCORTICAL DYSPLASIA PROTEIN ACD
HS05567FORKHEAD BOX PROTEIN
HS05568
HS05569UNCHARACTERIZED
HS05570CARBOXYLESTERASE
HS05571
HS05572FRIEND OF GATA2-RELATED
HS05573THYROTROPIN-RELEASING HORMONE RECEPTOR
HS05574ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
HS05575ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
HS05576UNCHARACTERIZED
HS05577CYTOCHROME C OXIDASE POLYPEPTIDE VIII
HS05578JNK-INTERACTING PROTEIN 1-LIKE PROTEIN
HS05579TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER
HS05580HYALURONAN SYNTHASE
HS05581CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE)
HS05582U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG
HS05583UPF0705 PROTEIN C11ORF49
HS05584MICROTUBULE ASSOCIATED PROTEIN XMAP215
HS05585ZINC FINGER AND BTB DOMAIN-CONTAINING
HS05586TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS05587
HS05588DBX
HS05589PROTEASE M1 ZINC METALLOPROTEASE
HS05590PROTEASE M1 ZINC METALLOPROTEASE
HS05591DYNEIN ASSEMBLY FACTOR 4, AXONEMAL
HS05592MITOCHONDRIAL RIBOSOMAL PROTEIN S33
HS05593MALE STERILITY PROTEIN 2-RELATED
HS05594KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
HS05595RAB15 EFFECTOR PROTEIN
HS05596LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS05597YALI0A06105P
HS05598CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
HS05599BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED
HS05600PARATHYROID HORMONE
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