About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05601
HS05602
HS05603SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS05604CHOLESTERYL ESTER TRANSFER PROTEIN
HS05605KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05606KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05607ZINC FINGER PROTEIN ZIC AND GLI
HS05608
HS05609ZINC FINGER PROTEIN
HS05610
HS05611ZINC FINGER PROTEIN ZIC AND GLI
HS05612KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05613REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05614KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05615ZINC FINGER PROTEIN
HS05616
HS05617ZINC FINGER PROTEIN ZIC AND GLI
HS05618ZINC FINGER AND BTB DOMAIN-CONTAINING
HS05619
HS05620ZINC FINGER PROTEIN
HS05621
HS05622REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05623KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05624REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05625
HS05626REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05627ZINC FINGER PROTEIN
HS05628REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05629ZINC FINGER PROTEIN ZIC AND GLI
HS05630ZINC FINGER PROTEIN
HS05631ZINC FINGER PROTEIN ZIC AND GLI
HS05632C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS05633SI:CH211-196P9.1-RELATED
HS05634KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05635ZINC FINGER PROTEIN ZIC AND GLI
HS05636DNAJ HOMOLOG SUBFAMILY C MEMBER 24
HS05637PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS05638
HS05639REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05640ZINC FINGER PROTEIN
HS05641TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS05642ANOCTAMIN
HS05643CHOLINE/ETHANOALAMINE KINASE
HS05644
HS05645F-BOX ONLY PROTEIN 4
HS05646PROTEASE M1 ZINC METALLOPROTEASE
HS05647ARPIN
HS05648UNCHARACTERIZED
HS05649D-LACTATE DEHYDROGENASE
HS05650E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN
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