About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05901PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS05902ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS05903ASPARTATE AMINOTRANSFERASE
HS05904NEUROPEPTIDE Y RECEPTOR
HS05905RAB11-RELATED
HS05906G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
HS05907PDZ AND LIM DOMAIN PROTEIN ZASP
HS05908SH3 DOMAIN-CONTAINING
HS05909NEURALIZED
HS05910NEURALIZED
HS05911HOMEOBOX PROTEIN NKX
HS05912TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
HS05913PHOSPHOLIPID ACYLTRANSFERASE
HS05914DNA-DIRECTED RNA POLYMERASE III
HS05915PROTEIN CBG15099
HS05916PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
HS05917SLD5 PROTEIN
HS05918RBP-RELATED
HS05919CORTACTIN AND DREBRIN
HS05920UBIQUITIN-CONJUGATING ENZYME E2
HS05921TRANSCRIPTION FACTOR 7 FAMILY MEMBER
HS05922UNCHARACTERIZED
HS05923IP21249P
HS05924PROTEIN MN1
HS05925PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
HS05926RAPSYN-RELATED
HS05927LD24721P
HS05928THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
HS05929E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED
HS05930RH14732P
HS05931RABPHILIN, ISOFORM A
HS05932VESICLE PROTEIN SORTING-ASSOCIATED
HS05933PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
HS05934RE48077P
HS05935HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
HS05936ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS05937C20ORF30 PROTEIN
HS05938PROTEIN SIDEKICK
HS05939ES1 PROTEIN HOMOLOG, MITOCHONDRIAL
HS05940TRANSMEMBRANE PROTEIN 127
HS05941WD40 PROTEIN CIAO1
HS05942DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
HS05943AN1-TYPE ZINC FINGER PROTEIN
HS05944TRANSMEMBRANE CHANNEL-RELATED
HS05945TRANSMEMBRANE CHANNEL-RELATED
HS05946
HS05947ANNEXIN
HS05948SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
HS05949NUCLEAR HORMONE RECEPTOR HR3-RELATED
HS05950TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
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