About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05851AGGRECAN/VERSICAN PROTEOGLYCAN
HS05852AGGRECAN/VERSICAN PROTEOGLYCAN
HS05853
HS05854DNA REPAIR PROTEIN XRCC4
HS05855PROTEIN KISH-A
HS05856PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
HS05857ARRESTIN DOMAIN CONTAINING PROTEIN
HS05858ARRESTIN DOMAIN CONTAINING PROTEIN
HS05859ARRESTIN DOMAIN CONTAINING PROTEIN
HS05860SINGLE STRANDED DNA BINDING PROTEIN
HS0586152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
HS05862ALPHA-1-ACID GLYCOPROTEIN
HS05863ALPHA-1-ACID GLYCOPROTEIN
HS05864G-PROTEIN COUPLED RECEPTOR
HS05865G-PROTEIN COUPLED RECEPTOR
HS05866SYNAPTIC VESICLE GLYCOPROTEIN 2
HS05867CENTROSOMAL PROTEIN POC5
HS05868ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS05869DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
HS05870PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
HS05871PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
HS05872ZGC:101016
HS05873GUANINE DEAMINASE
HS05874
HS05875GUANINE DEAMINASE
HS05876ADENOSINE/GUANOSINE DIPHOSPHATASE
HS05877MITOFERRIN-1-RELATED
HS05878HOMEOBOX PROTEIN NKX
HS05879HOMEOBOX PROTEIN NKX
HS05880STANNIOCALCIN
HS05881INDOLEAMINE 2,3-DIOXYGENASE
HS05882
HS05883RHO FAMILY GTPASE
HS05884BRIDGING INTEGRATOR 3
HS05885KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05886
HS05887LONG-CHAIN-FATTY-ACID--COA LIGASE
HS05888CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS05889CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
HS05890UBIQUITIN-LIKE PROTEIN 4A
HS05891DYNAMIN
HS05892PROTEIN DISPATCHED HOMOLOG 3
HS05893OVOCHYMASE-RELATED
HS05894TESTIS DEVELOPMENT PROTEIN PRTD
HS05895BETA-MICROSEMINOPROTEIN
HS05896ANTHRAX TOXIN RECEPTOR
HS05897GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING
HS05898IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
HS05899TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER
HS05900MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22
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