About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06151COILED-COIL DOMAIN-CONTAINING PROTEIN 84
HS06152ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS06153GH03947P
HS06154KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06155ODD-SKIPPED - RELATED
HS06156KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06157ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS06158KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06159UNCHARACTERIZED
HS06160UNCHARACTERIZED
HS06161ACETOACETYL-COA SYNTHETASE
HS06162SERINE/THREONINE PROTEIN KINASE
HS06163
HS06164PROTEASE M1 ZINC METALLOPROTEASE
HS06165N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
HS06166ENDONUCLEASE-RELATED
HS06167POL PROTEIN
HS06168REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06169TYROSINE-PROTEIN KINASE HOPSCOTCH
HS06170MONOCARBOXYLATE TRANSPORTER
HS06171GLYCINE DEHYDROGENASE, DECARBOXYLATING
HS06172PRENYLTRANSFERASES
HS06173MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
HS06174ZINC FINGER PROTEIN
HS06175GH01354P
HS06176CYTOKINE RECEPTOR
HS06177MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
HS06178NEPHRIN
HS06179MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S30/P52 PRO-APOTOTIC PROTEIN
HS06180LONG-CHAIN-FATTY-ACID--COA LIGASE
HS06181FLAVIN REDUCTASE-RELATED
HS06182SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
HS06183COILED-COIL DOMAIN-CONTAINING PROTEIN 158
HS06184CYCLINS
HS06185ALPHA-2,8-SIALYLTRANSFERASE
HS06186LD44762P
HS06187DNA POLYMERASE IOTA
HS06188RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
HS06189EG:EG0003.4 PROTEIN-RELATED
HS06190EG:EG0003.4 PROTEIN-RELATED
HS06191T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED
HS06192PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
HS06193PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
HS06194INTERMEDIATE FILAMENT
HS06195LIM/HOMEOBOX PROTEIN LHX
HS06196PROSTAGLANDIN G/H SYNTHASE
HS06197PROSTAGLANDIN G/H SYNTHASE
HS06198BASIGIN RELATED
HS06199METALLOPROTEASE
HS0620072 KDA INOSITOL POLYPHOSPHATE 5-PHOSPHATASE
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