About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06201BETA/GAMMA CRYSTALLIN
HS06202NOTCH LIGAND FAMILY MEMBER
HS06203UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1
HS06204UNCHARACTERIZED
HS06205
HS06206CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
HS06207OS02G0202900 PROTEIN
HS06208UNCHARACTERIZED
HS06209COLLAGEN ALPHA
HS06210ZGC:101858
HS06211ZGC:101858
HS06212PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
HS06213-
HS06214IRON-SULFUR CLUSTER CO-CHAPERONE PROTEINCB
HS06215SI:CH211-196P9.1-RELATED
HS06216REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06217REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06218SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS06219ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS06220REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06221PROLINE OXIDASE
HS06222ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS06223SCAVENGER RECEPTOR CLASS F
HS06224ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS06225SERINE/THREONINE-PROTEIN KINASE
HS06226ENDOSOME-ASSOCIATED TRAFFICKING REGULATOR 1
HS06227COILED-COIL DOMAIN-CONTAINING PROTEIN 180
HS06228CASPASE RECRUITMENT DOMAIN FAMILY
HS06229SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4
HS06230DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
HS06231GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS06232DYNAMIN
HS06233DYNAMIN
HS06234RAI16 PROTEIN-RELATED
HS06235
HS06236RAS GTPASE-ACTIVATING PROTEINS
HS06237POLYCOMB-LIKE TRANSCRIPTION FACTOR
HS06238FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS06239REGULATOR OF G-PROTEIN SIGNALING 3
HS06240MYOSIN LIGHT CHAIN 1, 3
HS06241TRANSCRIPTION TERMINATION FACTOR 1
HS06242
HS06243ENDONUCLEASE RELATED
HS06244
HS0624534 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
HS06246FCH AND DOUBLE SH3 DOMAINS PROTEIN
HS06247OLFACTOMEDIN-RELATED
HS06248
HS06249FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
HS06250AGAP004733-PA
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