About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06351ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS06352
HS06353TESTIS-SPECIFIC Y-ENCODED PROTEIN
HS06354OUTER DENSE FIBER OF SPERM TAILS 2
HS06355GLE-1-RELATED
HS06356MICROSOMAL PROSTAGLANDIN E SYNTHASE-2
HS06357GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS06358
HS06359SNF5
HS06360DER1-LIKE PROTEIN, DERLIN
HS06361MATRIX METALLOPROTEINASE
HS06362-
HS06363P2X PURINOCEPTOR
HS06364ZINC FINGER RNA-BINDING PROTEIN
HS06365GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS06366HEAT SHOCK 70 KDA PROTEIN 14
HS06367CYTOCHROME C OXIDASE SUBUNIT 6B
HS06368ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175
HS06369PHOSPHATIDATE CYTIDYLYLTRANSFERASE
HS06370BLUE CHEESE
HS06371RUN AND SH3 DOMAIN CONTAINING
HS06372PROTEIN UNC-13 HOMOLOG
HS06373SEC14 RELATED PROTEIN
HS06374RING ZINC FINGER
HS06375ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100
HS06376SOLUTE CARRIER FAMILY 39
HS06377AMSH-LIKE PROTEASE
HS06378PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
HS06379PROTEIN YIPPEE-LIKE CG15309-RELATED
HS06380MITOGEN-ACTIVATED PROTEIN KINASE
HS06381HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
HS06382RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
HS06383ANION EXCHANGE PROTEIN
HS06384NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS06385ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS06386SNF2/RAD54 HELICASE FAMILY
HS06387TRANSPOSABLE ELEMENT-RELATED
HS06388DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
HS06389DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
HS06390DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
HS06391CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157
HS06392KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
HS06393REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06394FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
HS06395FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
HS06396CYSTEINE PROTEASE FAMILY C1-RELATED
HS06397SERINE/THREONINE-PROTEIN KINASE 17
HS06398PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS06399METAL TRANSPORTER CNNM
HS06400
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