About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06401INTERLEUKIN-1 FAMILY MEMBER
HS06402CYTOSKELETON-ASSOCIATED PROTEIN 2-LIKE
HS06403CYTOSKELETON-ASSOCIATED PROTEIN 2-LIKE
HS06404HISTONE H2A
HS06405
HS06406PUR-TRANSCRIPTIONAL ACTIVATOR
HS06407HEPARAN SULFATE SULFOTRANSFERASE
HS06408HEPARAN SULFATE SULFOTRANSFERASE
HS06409SET DOMAIN-CONTAINING PROTEIN-RELATED
HS06410SEC24-RELATED PROTEIN
HS06411SERINE/THREONINE-PROTEIN KINASE
HS06412PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS06413KREMEN PROTEIN
HS06414METHYLTRANSFERASE
HS06415RING ZINC FINGER
HS06416
HS06417X-BOX BINDING PROTEIN 1
HS06418HEAT SHOCK PROTEIN BETA-8
HS06419
HS06420PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
HS06421AGAP004733-PA
HS06422BREAST CANCER METASTASIS-SUPPRESSOR 1
HS06423SI:CH211-196P9.1-RELATED
HS06424SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN
HS06425PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
HS06426LD33804P
HS06427NEPHRIN
HS06428WD40 REPEAT PROTEIN
HS06429REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
HS06430SERINE-THREONINE PROTEIN KINASE
HS06431NITRIC OXIDE SYNTHASE OXYGENASE
HS06432LEUCINE RICH REPEAT FAMILY PROTEIN
HS06433REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06434LEUCINE RICH REPEAT FAMILY PROTEIN
HS06435NIPSNAP-RELATED
HS06436CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE
HS06437TRANSMEMBRANE PROTEIN 119
HS06438-
HS06439PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
HS06440FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
HS06441CHEMOTACTIC RECEPTOR
HS06442WSCD FAMILY MEMBER CG9164
HS06443
HS06444SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS06445LIM DOMAIN KINASE 1
HS06446PLASMINOGEN-RELATED
HS06447THADA/DEATH RECEPTOR INTERACTING PROTEIN
HS06448TECTONIC FAMILY MEMBER
HS06449VACUOLAR PROTON ATPASES
HS06450UNCHARACTERIZED
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