About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06451COLLAGEN ALPHA
HS06452RHOMBOID-RELATED PROTEIN
HS06453RNA BINDING PROTEIN
HS06454TRANSGELIN
HS06455ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
HS06456RAS LIKE FAMILY 10 MEMBER B-RELATED
HS06457OXYSTEROL-BINDING PROTEIN-RELATED
HS06458
HS06459COILED-COIL DOMAIN-CONTAINING PROTEIN 117
HS06460TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
HS06461DEOXYNUCLEOSIDE KINASE
HS06462TGF-BETA FAMILY
HS06463EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN
HS06464ANKYRIN REPEAT-CONTAINING
HS06465ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS06466TRANSCRIPTION FACTOR COE FAMILY MEMBER
HS06467OXIDASE/PEROXIDASE
HS06468SAPOSIN-RELATED
HS06469UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS06470UPF0561 PROTEIN C2ORF68
HS06471SELENOPROTEIN F
HS06472S-ADENOSYLMETHIONINE SYNTHETASE
HS06473INOSITOL 5-PHOSPHATASE
HS06474
HS06475CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS06476TRAF-TYPE ZINC FINGER PROTEIN-RELATED
HS06477MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
HS06478C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED
HS06479FORKHEAD BOX PROTEIN
HS06480BNIP - RELATED
HS06481BNIP - RELATED
HS06482RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE
HS06483PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS06484TRANSPOSABLE ELEMENT-RELATED
HS06485UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER
HS06486KINESIN-RELATED PROTEIN 6
HS06487FERREDOXIN-RELATED
HS06488TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED
HS0648926S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9
HS06490RAB GDP/GTP EXCHANGE FACTOR
HS06491WD-40 REPEAT PROTEIN
HS06492PROTEIN MAX MYC-ASSOCIATED FACTOR X
HS06493ZINC FINGER, CCHC DOMAIN CONTAINING 8
HS06494PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
HS06495
HS06496UNCHARACTERIZED
HS06497KINETOCHORE-ASSOCIATED PROTEIN 1
HS06498HYDROXYCARBOXYLIC ACID RECEPTOR 2
HS06499HYDROXYCARBOXYLIC ACID RECEPTOR 2
HS06500HUNTINGTIN INTERACTING PROTEIN 1
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