About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06601ZINC FINGER PROTEIN ZIC AND GLI
HS06602GROWTH ARREST-SPECIFIC PROTEIN 1
HS06603THREONINE-TRNA LIGASE
HS06604FIVE-SPAN TRANSMEMBRANE PROTEIN M83
HS06605ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
HS06606TRANSDUCIN-LIKE ENHANCER PROTEIN
HS06607REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06608PHOSPHOSERINE AMINOTRANSFERASE
HS06609G-PROTEIN COUPLED RECEPTOR
HS06610IRON-SULFUR CLUSTER ASSEMBLY PROTEIN
HS06611POLY A POLYMERASE CID PAP -RELATED
HS06612CYCLINS
HS06613GEMININ
HS06614GLUTATHIONE PEROXIDASE
HS06615KALLIKREIN-RELATED
HS06616TRANSFORMING GROWTH FACTOR ALPHA
HS06617TRANSFORMING GROWTH FACTOR ALPHA
HS06618TRANSFORMING GROWTH FACTOR ALPHA
HS06619C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED
HS06620PHOSPHATE TRANSPORTER
HS06621
HS06622E3 UBIQUITIN-PROTEIN LIGASE KCMF1
HS06623LIPASE
HS06624AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
HS06625MATRIX PROTEIN, PUTATIVE-RELATED
HS06626SORTING NEXIN
HS06627NACHT, LRR AND CARD DOMAINS-CONTAINING
HS06628REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06629ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15
HS06630NADH-UBIQUINONE OXIDOREDUCTASE
HS06631FOLLISTATIN-RELATED
HS06632INTEGRIN ALPHA
HS06633EIF4G DOMAIN PROTEIN
HS06634FIBROBLAST GROWTH FACTOR
HS06635ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS06636PHOSPHOLIPID ACYLTRANSFERASE
HS06637MYOSIN REGULATORY LIGHT CHAIN 2
HS06638HEXOKINASE
HS06639SYNAPTOBREVIN HOMOLOG YKT6
HS06640AGAP007712-PA
HS06641INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
HS06642UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER
HS06643TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER
HS06644INTERLEUKIN-12 SUBUNIT BETA-RELATED
HS06645PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN
HS06646ZINC FINGER PROTEIN
HS06647PHOSPHATIDYLINOSITOL KINASE
HS06648SERINE PROTEASE INHIBITOR, SERPIN
HS06649SYNAPTOSOMAL ASSOCIATED PROTEIN
HS06650RPE-SPONDIN
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