About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06701FACIOGENITAL DYSPLASIA PROTEIN
HS06702ZINC FINGER PROTEIN
HS06703
HS06704ARGININE OR CREATINE KINASE
HS06705CORTICOTROPIN-RELEASING FACTOR-BINDING PROTEIN
HS06706HOMEOBOX PROTEIN ORTHOPEDIA
HS06707SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
HS06708LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS06709BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
HS06710BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
HS06711
HS06712KPL2-RELATED
HS06713SEMAPHORIN
HS06714
HS06715RABCONNECTIN-RELATED
HS06716
HS06717DEHYDROGENASES, SHORT CHAIN
HS06718-
HS06719SESQUIPEDALIAN
HS06720SH2B ADAPTER PROTEIN
HS06721ATAXIN 2-RELATED
HS06722SERINE/THREONINE-PROTEIN KINASE
HS06723OSTEOCLAST-STIMULATING FACTOR 1
HS06724URIDINE KINASE
HS06725PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
HS06726RING ZINC FINGER PROTEIN
HS06727CHONDROITIN SYNTHASE
HS06728LIPID PHOSPHATE PHOSPHATASE
HS06729ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
HS06730E3 UBIQUITIN-PROTEIN LIGASE RNF165
HS06731
HS06732PROTEIN CBG12474
HS06733G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS06734MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27
HS06735ZINC FINGER PROTEIN
HS06736NEUROPHYSIN
HS06737FATTY ACID BINDING PROTEIN
HS06738HISTONE-LYSINE N-METHYLTRANSFERASE SMYD
HS06739ZIPPER PUTATIVE TUMOR SUPPRESSOR 2 HOMOLOG-LIKE PROTEIN-RELATED
HS06740RING FINGER PROTEIN 37
HS06741NEUROPHYSIN
HS06742
HS06743ZINC FINGER PROTEIN ZIC AND GLI
HS06744HYALURONIC ACID-BINDING PROTEIN 4
HS06745TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS06746
HS06747-
HS06748F-BOX/TPR REPEAT PROTEIN POF3
HS06749SI:CH211-196P9.1-RELATED
HS06750EPHRIN
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